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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13178161_13180560_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13178161 - 13180560
Intron Length:
2400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATG
Flanking Amino Acid:
ACGLDHGELEVFPKSHVVSA
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
69.9
41.1
Major BPS
100
1.24
0.5
100
0
Major PPT
85.5
0.8
0.8
81.4
29.4
Minor 5ss
29.8
-2.3
3.3
38.5
46.6
Minor BPS
53.4
-0
1.8
61.64
41.7

Associated Gene:

Gene:
GBA2
Ensembl Gene ID:
ENSAPLG00000021293
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030347
13177237 - 13187932
10696