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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13180927_13181056_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13180927 - 13181056
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTCCGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCAAC
U12 Branch Point Sequence:
TTCTCCTTGCTC
Flanking Amino Acid:
TYDAWVVNGASAYCGGLWLA
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
48.7
-0
1.3
56.4
38.8
Major PPT
70.1
0.45
1
65.8
36
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
47.7
-0.2
3.5
73.15
38.8

Associated Gene:

Gene:
GBA2
Ensembl Gene ID:
ENSAPLG00000021293
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030347
13177237 - 13187932
10696