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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13181412_13181646_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13181412 - 13181646
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGT
5'SS Class:
strong_major
3'SS Sequence:
CATCCCCGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TGGCCCTGAGCC
Flanking Amino Acid:
NVVPHDIGDPDDEPWQRVNA
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
73
38.2
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
68.6
0.42
0.9
61.8
34.4
Minor 5ss
25.5
-2.8
3.5
37.8
47.1
Minor BPS
50.8
0.01
1.7
62.13
42.6

Associated Gene:

Gene:
GBA2
Ensembl Gene ID:
ENSAPLG00000021293
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030347
13177237 - 13187932
10696