About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13182060_13182233_R


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
13182060 - 13182233

Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAACTCCT

5'SS Class:
strong_major

3'SS Sequence:
CCGGTGCTTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CCCTCAC

U12 Branch Point Sequence:
CCTCCCTCACCA

Flanking Amino Acid:
REYGRFAYLEGQEYRMYNTY

Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
81.7
0.75
1.1
75.3
40.8

Major BPS
60.1
0.25
1.1
62.9
34.3

Major PPT
68.9
0.43
1
60.9
40.2

Minor 5ss
42.4
-0.8
2.9
60.3
44

Minor BPS
49.3
-0
1.9
60.78
45.1

Associated Gene:

Gene:
GBA2

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

13177237 - 13187932
10696