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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13184134_13184394_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13184134 - 13184394
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ATTTCCTGATGC
Flanking Amino Acid:
FTFAVAAREKAGTAVTHLTA
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
71.3
0.48
0.9
62.2
38.9
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
52.9
0.07
2
69.77
41.5

Associated Gene:

Gene:
GBA2
Ensembl Gene ID:
ENSAPLG00000021293
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030347
13177237 - 13187932
10696