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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13185660_13185797_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13185660 - 13185797
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
CTTTCCTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTCATCTCACCC
Flanking Amino Acid:
YHYGTVIADQFTVCLRRKGQ
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
38.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
81.1
0.7
0.7
73.3
31.6
Minor 5ss
33.9
-1.8
3.7
49.6
47
Minor BPS
46
-0.3
1.8
54.33
43.9

Associated Gene:

Gene:
GBA2
Ensembl Gene ID:
ENSAPLG00000021293
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030347
13177237 - 13187932
10696