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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13191495_13191866_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13191495 - 13191866
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGTTCAC
U12 Branch Point Sequence:
TTCACGTGAGGT
Flanking Amino Acid:
ENETVFVPNRGERGQCILST
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.9
35.3
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
81.2
0.7
0.8
74
36.7
Minor 5ss
33.5
-1.9
3.4
47.6
48
Minor BPS
40.1
-0.6
2.4
61.31
48

Associated Gene:

Gene:
RGP1
Ensembl Gene ID:
ENSAPLG00000006838
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007113
13188672 - 13196168
7497