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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13197848_13198068_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13197848 - 13198068
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
CCCTCTCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
GGGAGCTGATGG
Flanking Amino Acid:
LHPIGVGCCETTQHPIDFPD
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
68.4
38.7
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
74.1
0.54
0.7
68.4
25.2
Minor 5ss
28
-2.5
3
30.3
36.2
Minor BPS
33.7
-1.3
2
30.39
40.6

Associated Gene:

Gene:
MSMP
Ensembl Gene ID:
ENSAPLG00000018747
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044459
13197658 - 13198890
1233