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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13198178_13198541_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13198178 - 13198541
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
CCCTCCTTAAGC
Flanking Amino Acid:
SQAKCYFQAKAPCEYEGKQF
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
67.1
44.6
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
87.4
0.84
0.7
82.5
26.3
Minor 5ss
35.7
-1.6
3.3
46.8
48.5
Minor BPS
63.4
0.4
1.7
65.58
46.5

Associated Gene:

Gene:
MSMP
Ensembl Gene ID:
ENSAPLG00000018747
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044459
13197658 - 13198890
1233