About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13212129_13212224_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13212129 - 13212224
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCGGGGCT
5'SS Class:
weak_major
3'SS Sequence:
CCCCCCCCGGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
CCCCCCCCACCC
Flanking Amino Acid:
GISSFLIFRWLMREKERASM
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.7
0.14
1.4
57.7
38.4
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
50.9
0.02
1
51.9
24.9
Minor 5ss
25.4
-2.8
3.6
30.4
42.9
Minor BPS
39.8
-0.7
2
44.52
43.6

Associated Gene:

Gene:
NPR2
Ensembl Gene ID:
ENSAPLG00000025468
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035735
13205265 - 13215689
10425