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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13212674_13212797_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13212674 - 13212797
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTCCG
5'SS Class:
major
3'SS Sequence:
TCCTTACCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CTCTCCTTACCC
Flanking Amino Acid:
QIFANTGHFKGNVVAIKHVN
Intron Amino Acid Position:
559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.3
66.3
45.2
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
74.6
0.55
0.8
66
34.9
Minor 5ss
30
-2.3
2.6
34
41.3
Minor BPS
68.2
0.55
1.7
73.91
43.5

Associated Gene:

Gene:
NPR2
Ensembl Gene ID:
ENSAPLG00000025468
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035735
13205265 - 13215689
10425