Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13216930_13217013_R

Intron Information:

Intron Rank:

136927

Intron Class:

major

Intron Phase:

Intron Coordinates:

13216930 - 13217013

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGACTG

5'SS Class:

strong_major

3'SS Sequence:

GGTGGTCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCAAAAT

U12 Branch Point Sequence:

GACCCCAAAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.9

71.5

40.2

Major BPS

48.3

-0.1

1.2

53.2

37.3

Major PPT

62.8

0.29

53.8

41.6

Minor 5ss

30.1

-2.3

3.1

38.3

46.6

Minor BPS

44.7

-0.4

1.9

50.81

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021161

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027854

13216353 - 13218160

1808

ENSAPLT00000040497

13216353 - 13219025

2673