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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13220133_13220560_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13220133 - 13220560
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCCGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CCACACTGACCC
Flanking Amino Acid:
CRPPSSTRTRSDQRREARRP
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
69.9
41.1
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
69.7
0.44
0.9
65.4
30.5
Minor 5ss
29.8
-2.3
3.3
38.5
46.6
Minor BPS
42.4
-0.5
1.8
46.55
41.9

Associated Gene:

Gene:
TESK1
Ensembl Gene ID:
ENSAPLG00000009265
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009644
13220015 - 13258367
38353