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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13220291_13220364_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
13220291 - 13220364
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAG
U12 Branch Point Sequence:
CAGGGCTGAGCC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
43.9
-0.3
1.6
36.8
44.4
Major PPT
70.9
0.47
0.7
64.7
23.9
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
40
-0.7
2
43.92
43.8

Associated Gene:

Gene:
TESK1
Ensembl Gene ID:
ENSAPLG00000009265
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017772
13220218 - 13258367
38150