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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13220470_13220560_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13220470 - 13220560
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
GGGCGCTGCACC
Flanking Amino Acid:
CRPPSSTRTRSAWSSATWPP
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
69.9
41.1
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
70.9
0.47
0.7
64.7
23.9
Minor 5ss
29.8
-2.3
3.3
38.5
46.6
Minor BPS
40.2
-0.7
2.2
46.36
42

Associated Gene:

Gene:
TESK1
Ensembl Gene ID:
ENSAPLG00000009265
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017772
13220218 - 13258367
38150