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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13222468_13222565_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13222468 - 13222565
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
TTTGTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTGTCCCCACA
Flanking Amino Acid:
LQQRLGAPAAGLAAVQHQQG
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
70.6
37
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
79.4
0.66
0.8
73.3
31.8
Minor 5ss
33.7
-1.9
2.9
40.3
45.6
Minor BPS
43.8
-0.4
2.3
63.62
42.9

Associated Gene:

Gene:
TAF1C
Ensembl Gene ID:
ENSAPLG00000030984
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034504
13221317 - 13225694
4378
ENSAPLT00000030273
13221317 - 13225694
4378
ENSAPLT00000024859
13221317 - 13225694
4378
ENSAPLT00000036559
13221317 - 13225694
4378