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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13222704_13222819_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13222704 - 13222819
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCGGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGGTGAT
U12 Branch Point Sequence:
TTTTGGGGCACT
Flanking Amino Acid:
MQELLLLQYTGGSKSACQLV
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
71.2
34.6
Major BPS
49.3
-0
1.5
42.8
49.4
Major PPT
82
0.72
0.9
76.2
37.8
Minor 5ss
24.3
-3
3.1
28.4
43.8
Minor BPS
36
-1
3
68.08
48.5

Associated Gene:

Gene:
TAF1C
Ensembl Gene ID:
ENSAPLG00000030984
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034504
13221317 - 13225694
4378
ENSAPLT00000030273
13221317 - 13225694
4378
ENSAPLT00000024859
13221317 - 13225694
4378
ENSAPLT00000036559
13221317 - 13225694
4378