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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13222995_13223114_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13222995 - 13223114
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCCTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
CCCCGCTGAGCT
Flanking Amino Acid:
HPCQHLVTTQFAVYLMDERL
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
69.9
0.45
0.8
60.4
29.4
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
42
-0.5
2
53.75
47.4

Associated Gene:

Gene:
TAF1C
Ensembl Gene ID:
ENSAPLG00000030984
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036559
13221317 - 13225694
4378
ENSAPLT00000034504
13221317 - 13225694
4378
ENSAPLT00000030273
13221317 - 13225694
4378
ENSAPLT00000024859
13221317 - 13225694
4378