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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13224398_13224483_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13224398 - 13224483
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GCTGTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGACAC
U12 Branch Point Sequence:
CTCCCCGTGACA
Flanking Amino Acid:
VEELNRLEARRGCPRRHFVS
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
46
-0.2
1.3
52.4
43.3
Major PPT
69.3
0.43
0.9
62
34.8
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
49.9
-0
2.1
63.6
43

Associated Gene:

Gene:
TAF1C
Ensembl Gene ID:
ENSAPLG00000030984
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036559
13221317 - 13225694
4378
ENSAPLT00000034504
13221317 - 13225694
4378
ENSAPLT00000030273
13221317 - 13225694
4378
ENSAPLT00000024859
13221317 - 13225694
4378