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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13224738_13224821_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13224738 - 13224821
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGCG
5'SS Class:
major
3'SS Sequence:
CCAACCCGCACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
ACATCCTGACCC
Flanking Amino Acid:
SGAALDFTKQLGHFFVDHPE
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.2
54.5
43.1
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
56.8
0.15
1
49.1
33.8
Minor 5ss
35.2
-1.7
3.5
48.4
47.3
Minor BPS
53.7
0.1
1.8
62.62
42.5

Associated Gene:

Gene:
TAF1C
Ensembl Gene ID:
ENSAPLG00000030984
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036559
13221317 - 13225694
4378
ENSAPLT00000034504
13221317 - 13225694
4378
ENSAPLT00000030273
13221317 - 13225694
4378
ENSAPLT00000024859
13221317 - 13225694
4378