Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13225137_13225220_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13225137 - 13225220

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGGG

5'SS Class:

strong_major

3'SS Sequence:

TGTCCCCGTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

CCACCCTCACCT

Flanking Amino Acid:

GQVLEAGSGQVPPPFVPRRS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

65.9

40.1

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

71.9

0.49

65.1

36.3

Minor 5ss

24.4

-2.9

3.1

29.4

43.3

Minor BPS

-0

1.9

62.42

47.1

Associated Gene:

Gene:

TAF1C

Ensembl Gene ID:

ENSAPLG00000030984

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024859

13221317 - 13225694

4378