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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13232747_13233213_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13232747 - 13233213
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGGA
5'SS Class:
major
3'SS Sequence:
TCTTCCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CCGGCTCTGACA
Flanking Amino Acid:
VSFQVIVQLTDCSRPSLSRP
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.1
40.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
83.6
0.76
0.7
77.7
24.2
Minor 5ss
22.7
-3.1
3.2
19.9
37.9
Minor BPS
45.6
-0.3
1.7
49.9
42.1

Associated Gene:

Gene:
TMEM8B
Ensembl Gene ID:
ENSAPLG00000020746
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047170
13231542 - 13236091
4550