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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13244501_13244999_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
13244501 - 13244999
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGCTC
5'SS Class:
major
3'SS Sequence:
CTCCCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
ACCCCACTGAGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
63.9
42.4
Major BPS
67.8
0.44
1
75
30.1
Major PPT
76
0.59
0.7
69.2
24.6
Minor 5ss
29.4
-2.4
3.3
33.6
41.9
Minor BPS
40.1
-0.7
2
52.81
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021510
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042324
13244397 - 13249387
4991