Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13505496_13508175_R

Intron Information:

Intron Rank:

138872

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

13505496 - 13508175

Intron Length:

2680

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTCAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

AATTCTGAGGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

1.2

77.9

38.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

59.6

0.22

1.2

55.3

Minor 5ss

30.5

-2.2

2.5

33.4

41.8

Minor BPS

84.9

1.17

0.8

94.97

24.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022207

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025338

13504657 - 13512751

8095