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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13563153_13563232_F

Intron Information:

Intron Rank:
142433
Intron Class:
major
Intron Phase:
Intron Coordinates:
13563153 - 13563232
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTCTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.3
0.82
0.7
81.5
29.3
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
72.9
0.8
1.6
87.15
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026731
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024953
13562964 - 13567825
4862