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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_13563323_13566634_F

Intron Information:

Intron Rank:
142434
Intron Class:
major
Intron Phase:
Intron Coordinates:
13563323 - 13566634
Intron Length:
3312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGAATTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
80.7
34.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
76.9
0.61
1
73.1
41.5
Minor 5ss
49.9
-0
2.8
73.7
42.8
Minor BPS
49.8
0.07
1.6
65.44
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026731
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024953
13562964 - 13567825
4862