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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14030358_14031094_F

Intron Information:

Intron Rank:
149289
Intron Class:
major
Intron Phase:
Intron Coordinates:
14030358 - 14031094
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTCATCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCCTCTTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.8
31.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.7
0.69
0.8
78.4
34.3
Minor 5ss
39.9
-1.1
2.8
51.4
45.5
Minor BPS
57.8
0.32
1.7
72.46
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030288
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042960
14029971 - 14032053
2083