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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14035409_14042901_F

Intron Information:

Intron Rank:
148531
Intron Class:
major
Intron Phase:
Intron Coordinates:
14035409 - 14042901
Intron Length:
7493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTAATCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AGAATCTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
72.9
0.52
0.9
66.1
38.7
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
66.7
0.52
1.3
68.33
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026416
14035041 - 14067158
32118