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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14042937_14046746_F

Intron Information:

Intron Rank:
148525
Intron Class:
major
Intron Phase:
Intron Coordinates:
14042937 - 14046746
Intron Length:
3810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCAATCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
67.7
0.4
1
59.7
40.4
Minor 5ss
34.7
-1.7
3
45.3
42.8
Minor BPS
71.3
0.75
1.5
85.73
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020350
14042821 - 14067158
24338