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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14047873_14066105_F

Intron Information:

Intron Rank:
148527
Intron Class:
major
Intron Phase:
Intron Coordinates:
14047873 - 14066105
Intron Length:
18233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTCAGTTCA
5'SS Class:
major
3'SS Sequence:
TTATTTACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGTTTATTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.3
70.3
36.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
83.5
0.75
0.8
78.6
34.3
Minor 5ss
36
-1.6
2.7
39.4
40
Minor BPS
60
0.4
1.9
81.9
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026416
14035041 - 14067158
32118
ENSAPLT00000023809
14047792 - 14150541
102750
ENSAPLT00000020350
14042821 - 14067158
24338