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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14130323_14131284_R

Intron Information:

Intron Rank:
145080
Intron Class:
major
Intron Phase:
Intron Coordinates:
14130323 - 14131284
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTGTGGTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
74.7
0.55
0.8
74.8
28.8
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
48.8
-0.2
2.5
62.53
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025467
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039643
14127868 - 14131588
3721