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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14130495_14150539_F

Intron Information:

Intron Rank:
148528
Intron Class:
major
Intron Phase:
Intron Coordinates:
14130495 - 14150539
Intron Length:
20045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTGAA
5'SS Class:
major
3'SS Sequence:
CTTCCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATGTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.1
31.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.7
0.85
0.7
80.1
31.9
Minor 5ss
39.8
-1.1
3.1
48.3
42.4
Minor BPS
46.4
-0.2
2.3
66.6
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022004
14130394 - 14151804
21411