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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14336367_14345699_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14336367 - 14345699
Intron Length:
9333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGAAAA
5'SS Class:
major
3'SS Sequence:
CTTCTGTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAG
U12 Branch Point Sequence:
AAGTCGCCAATC
Flanking Amino Acid:
AQLGLGEIALAIRSFQVSLH
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
69.6
36.5
Major BPS
49.8
-0
1.5
65
38.7
Major PPT
81.2
0.7
0.8
76.5
32.1
Minor 5ss
31.5
-2.1
3.2
36.3
42
Minor BPS
41
-0.7
2.3
51.02
39.8

Associated Gene:

Gene:
TTC33
Ensembl Gene ID:
ENSAPLG00000012734
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013251
14336016 - 14384989
48974