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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14359335_14384516_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14359335 - 14384516
Intron Length:
25182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCGCTG
5'SS Class:
major
3'SS Sequence:
GTTTTAACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTGTTTTAACT
Flanking Amino Acid:
DEGASLAENRRYREAIQKWD
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.3
55.2
49
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.3
0.64
0.9
71.6
38.3
Minor 5ss
38.5
-1.3
3.6
55.3
48.9
Minor BPS
73.9
0.83
1.3
85.39
35.1

Associated Gene:

Gene:
TTC33
Ensembl Gene ID:
ENSAPLG00000012734
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013251
14336016 - 14384989
48974