About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14388389_14390689_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14388389 - 14390689
Intron Length:
2301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGATAACTAACT
Flanking Amino Acid:
TYLLDFRSIDDEITEAKSGT
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
72
32.7
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
81.1
0.7
0.7
77.6
24.3
Minor 5ss
38.2
-1.3
3.1
45.3
45.2
Minor BPS
48.9
-0
2.1
73.52
42

Associated Gene:

Gene:
PRKAA1
Ensembl Gene ID:
ENSAPLG00000012738
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013286
14387607 - 14404138
16532