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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14390817_14391197_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14390817 - 14391197
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
GTTTTGGTAACT
Flanking Amino Acid:
AIKQLDYEWKVVNPYYLRVR
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
75.9
0.58
0.9
69.6
41.4
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
49.7
0.06
2.6
79.89
42.3

Associated Gene:

Gene:
PRKAA1
Ensembl Gene ID:
ENSAPLG00000012738
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013286
14387607 - 14404138
16532