About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14391685_14393852_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14391685 - 14393852
Intron Length:
2168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTAAACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTGTTCTTAAAC
Flanking Amino Acid:
PMKRATIRDIREHEWFKQDL
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
67
0.38
0.9
60.2
39.7
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
74.9
0.76
1.3
79.2
36

Associated Gene:

Gene:
PRKAA1
Ensembl Gene ID:
ENSAPLG00000012738
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013286
14387607 - 14404138
16532