Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14394968_14396086_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14394968 - 14396086

Intron Length:

1119

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGCATT

5'SS Class:

strong_major

3'SS Sequence:

TATACACTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTTAT

U12 Branch Point Sequence:

GCTCTCTGAATT

Flanking Amino Acid:

AHMNAKIADFGLSNMMSDGE

Intron Amino Acid Position:

151

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

83.5

Major BPS

79.1

0.72

69.3

38.4

Major PPT

75.7

0.58

0.9

39.5

Minor 5ss

45.5

-0.5

2.9

63.6

Minor BPS

58.7

0.35

1.4

70.72

40.3

Associated Gene:

Gene:

PRKAA1

Ensembl Gene ID:

ENSAPLG00000012738

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013286

14387607 - 14404138

16532