Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14396232_14397052_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14396232 - 14397052

Intron Length:

821

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGAAGT

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTGTCTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

TGTTTCAAAATT

Flanking Amino Acid:

LFDYICKNGRLDEKESRRLF

Intron Amino Acid Position:

103

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

75.5

40.6

Major BPS

73.1

0.58

79.6

29.1

Major PPT

77.5

0.62

0.9

77.1

37.1

Minor 5ss

34.8

-1.7

41.4

44.7

Minor BPS

54.2

0.21

1.9

77.07

39.7

Associated Gene:

Gene:

PRKAA1

Ensembl Gene ID:

ENSAPLG00000012738

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013286

14387607 - 14404138

16532