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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14400396_14404068_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14400396 - 14404068
Intron Length:
3673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
GACTAATTAAAT
Flanking Amino Acid:
EGQACLWTTAVGKHELTGHK
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
71.2
34.6
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
86.6
0.82
0.8
81.4
30.6
Minor 5ss
24.3
-3
3.1
28.4
43.8
Minor BPS
49
0
1.9
66.08
43.3

Associated Gene:

Gene:
PRKAA1
Ensembl Gene ID:
ENSAPLG00000012738
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013286
14387607 - 14404138
16532