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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14442311_14443252_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14442311 - 14443252
Intron Length:
942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAA
U12 Branch Point Sequence:
TTGAGCATGACT
Flanking Amino Acid:
QRETKEHSQKSRQLMVIENS
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
64.3
0.35
1.2
55.4
42
Major PPT
84.5
0.78
0.7
77.5
31.3
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
48.7
-0
2.1
72.99
43.9

Associated Gene:

Gene:
C7
Ensembl Gene ID:
ENSAPLG00000009032
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009483
14437208 - 14460628
23421