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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14443497_14444648_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14443497 - 14444648
Intron Length:
1152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTAT
5'SS Class:
major
3'SS Sequence:
CTATGATCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
GATTCTATGATT
Flanking Amino Acid:
YMDTDKMKAEGLSTTDMYQC
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
69
38.3
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
73.5
0.53
0.9
66.3
39.5
Minor 5ss
36.4
-1.5
3.7
54.5
49.7
Minor BPS
57.5
0.32
1.6
73.53
37.3

Associated Gene:

Gene:
C7
Ensembl Gene ID:
ENSAPLG00000009032
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009483
14437208 - 14460628
23421