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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14446840_14447436_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
14446840 - 14447436
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCACT
5'SS Class:
major
3'SS Sequence:
AAATGTAACATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
ATATTCTCAAAT
Flanking Amino Acid:
EMGTLVQDQPGVVDGHWSCW
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.3
75.3
40.8
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
51.7
0.04
1
44.6
40.5
Minor 5ss
37.4
-1.4
2.8
50.5
45.5
Minor BPS
61.1
0.43
1.6
76.98
38.8

Associated Gene:

Gene:
C7
Ensembl Gene ID:
ENSAPLG00000009032
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009483
14437208 - 14460628
23421