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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14447609_14447988_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14447609 - 14447988
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGGCAGA
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTAAACTTAACT
Flanking Amino Acid:
PCEDEELQHLRFIEPHCFDT
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
60.2
46.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
85.5
0.8
0.7
80.6
31.5
Minor 5ss
37.8
-1.4
3.2
48.4
47.5
Minor BPS
73.5
0.82
1.5
87.33
37.3

Associated Gene:

Gene:
C7
Ensembl Gene ID:
ENSAPLG00000009032
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009483
14437208 - 14460628
23421