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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14448077_14449455_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14448077 - 14449455
Intron Length:
1379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATATATTTAATA
Flanking Amino Acid:
PPLLENGFIQNAENSYPVGK
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
77.7
33.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.1
0.81
0.8
78.3
39.6
Minor 5ss
47.2
-0.3
2.9
64.7
41
Minor BPS
65.8
0.49
1.4
71.62
34.1

Associated Gene:

Gene:
C7
Ensembl Gene ID:
ENSAPLG00000009032
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009483
14437208 - 14460628
23421