About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14453286_14458129_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14453286 - 14458129
Intron Length:
4844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
CACGTATAAATG
Flanking Amino Acid:
QCVCKMPYECGPSLDVCATD
Intron Amino Acid Position:
711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.7
33.5
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
40
-1.1
2.7
42.4
44.3
Minor BPS
39.7
-0.9
1.9
36.09
40.3

Associated Gene:

Gene:
C7
Ensembl Gene ID:
ENSAPLG00000009032
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009483
14437208 - 14460628
23421