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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14458315_14459964_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14458315 - 14459964
Intron Length:
1650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTACTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TCTTTCTTTACT
Flanking Amino Acid:
GSCHSWERCDAESNSCVCDE
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77.7
31.2
Major BPS
74
0.6
1
65.6
41.1
Major PPT
84.7
0.78
0.8
84.9
28.7
Minor 5ss
42.6
-0.8
3.1
56.7
42.1
Minor BPS
73.8
0.83
1.6
87.49
38.1

Associated Gene:

Gene:
C7
Ensembl Gene ID:
ENSAPLG00000009032
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009483
14437208 - 14460628
23421