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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14477676_14478041_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14477676 - 14478041
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
GTTATAAGAACT
Flanking Amino Acid:
PVLRHITCEKDEQTKIRGFC
Intron Amino Acid Position:
770

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
1
86.4
29.1
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
81.6
0.71
0.8
79.5
32.5
Minor 5ss
36.7
-1.5
2.7
46.1
42.1
Minor BPS
45.7
-0.2
2
68.96
40.8

Associated Gene:

Gene:
C6
Ensembl Gene ID:
ENSAPLG00000009882
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022676
14471638 - 14498961
27324
ENSAPLT00000022345
14471638 - 14500336
28699
ENSAPLT00000010327
14473200 - 14500336
27137