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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14478234_14479208_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14478234 - 14479208
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGAAAT
5'SS Class:
major
3'SS Sequence:
TTGTTTATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCTTGTTTATTA
Flanking Amino Acid:
TWTQQVVECQPALCLRPPIS
Intron Amino Acid Position:
706

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.3
80.7
33.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.1
0.81
0.8
81
35.3
Minor 5ss
36.5
-1.5
3.1
48.8
40.5
Minor BPS
51.5
0.04
2
66.17
41.5

Associated Gene:

Gene:
C6
Ensembl Gene ID:
ENSAPLG00000009882
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022676
14471638 - 14498961
27324
ENSAPLT00000022345
14471638 - 14500336
28699
ENSAPLT00000010327
14473200 - 14500336
27137