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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14479965_14480895_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14479965 - 14480895
Intron Length:
931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGAGA
5'SS Class:
major
3'SS Sequence:
TTTTACTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTATCCTTAACA
Flanking Amino Acid:
EDCHVSVFTDKGAPCINDDE
Intron Amino Acid Position:
624

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.4
38.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.9
0.83
0.7
85.6
28.6
Minor 5ss
33.3
-1.9
3.2
39.9
40.2
Minor BPS
85.6
1.12
1
85.61
33

Associated Gene:

Gene:
C6
Ensembl Gene ID:
ENSAPLG00000009882
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022676
14471638 - 14498961
27324
ENSAPLT00000022345
14471638 - 14500336
28699
ENSAPLT00000010327
14473200 - 14500336
27137